List of Publications

Publications in Scientific Journals

  1. S. Koppermann, Z. Cui, P. D. Fischer, X. Wang, J. Ludwig, J. S. Thorson, S. G. Van Lanen, C. Ducho; Insights into the Target Interaction of Naturally Occurring Muraymycin Nucleoside Antibiotics; ChemMedChem 2018, accepted article (DOI: 10.1002/cmdc.201700793).
  2. Y. Huang, X. Liu, Z. Cui, D. Wiegmann, G. Niro, C. Ducho, Y. Song, Z. Yang, S. G. Van Lanen; Pyridoxal-5'-phosphate as an oxygenase cofactor: Discovery of a carboxamide-forming, α-amino acid monooxygenase-decarboxylase; Proc. Natl. Acad. Sci. USA 2018, 115, 974-979.
  3. D. Wiegmann, A. P. Spork, G. Niro, C. Ducho; Ribosylation of an Acid-Labile Glycosyl Acceptor as a Potential Key Step for the Synthesis of Nucleoside Antibiotics; Synlett 2018, eFirst (DOI: 10.1055/s-0036-1591517).
  4. B. Schmidtgall, A. Kuepper, M. Meng, T. N. Grossmann, C. Ducho; Oligonucleotides with Cationic Backbone and Their Hybridization with DNA: Interplay of Base Pairing and Electrostatic Attraction; Chem. Eur. J. 2018, 24, 1544-1553. (selected as 'Hot Paper')
  5. E. Schönauer, A. M. Kany, J. Haupenthal, K. Hüsecken, I. J. Hoppe, K. Voos, S. Yahiaoui, B. Elsässer, C. Ducho, H. Brandstetter, R. W. Hartmann; Discovery of a Potent Inhibitor Class with High Selectivity toward Clostridial Collagenases; J. Am. Chem. Soc. 2017, 139, 12696-12703.
  6. S. Wohnig, A. P. Spork, S. Koppermann, G. Mieskes, N. Gisch, R. Jahn, C. Ducho; Total Synthesis of Dansylated Park's Nucleotide for High-Throughput MraY Assays; Chem. Eur. J. 2016, 22, 17813-17819.
  7. F. Gräf, B. Vukosavljevic, J.-P. Michel, M. Wirth, O. Ries, C. De Rossi, M. Windbergs, V. Rosilio, C. Ducho, S. Gordon, C.-M. Lehr; The bacterial cell envelope as delimiter of anti-infective bioavailability - An in vitro permeation model of the Gram-negative bacterial inner membrane; J. Controlled Release 2016, 243, 214-224.
  8. S. Koppermann, C. Ducho; Naturstoffe bei der Arbeit: strukturelle Einblicke in die Inhibition des bakteriellen Membranproteins MraY; Angew. Chem. 2016, 128, 11896-11898; Natural Products at Work: Structural Insights into Inhibition of the Bacterial Membrane Protein MraY; Angew. Chem. Int. Ed. 2016, 55, 11722-11724. (Highlight article)
  9. D. Wiegmann, S. Koppermann, M. Wirth, G. Niro, K. Leyerer, C. Ducho; Muraymycin nucleoside-peptide antibiotics: uridine-derived natural products as lead structures for the development of novel antibacterial agents; Beilstein J. Org. Chem. 2016, 12, 769-795. (Review)
  10. A. Lemke, C. Ducho; Synthesis of Deuterium-Labelled 3-Hydroxy-L-arginine: Comparative Studies on Different Protecting-Group Strategies; Eur. J. Org. Chem. 2016, 87-98.
  11. C. Ducho; Enzymatically Cleavable siRNA Prodrugs: a New Paradigm for the Intracellular Delivery of RNA-Based Therapeutics; ChemMedChem 2015, 10, 1625-1627. (Highlight article)
  12. W. Cai, A. Goswami, Z. Yang, X. Liu, K. D. Green, S. Barnard-Britson, S. Baba, M. Funabashi, K. Nonaka, M. Sunkara, A. J. Morris, A. P. Spork, C. Ducho, S. Garneau-Tsodikova, J. S. Thorson, S. G. Van Lanen; The Biosynthesis of Capuramycin-Type Antibiotics: Identification of the A-102395 Biosynthetic Gene Cluster, Mechanism of Self-Resistance, and Formation of Uridine-5'-Carboxamide; J. Biol. Chem. 2015, 290, 13710-13724.
  13. O. Ries, C. Carnarius, C. Steinem, C. Ducho; Membrane-interacting properties of the functionalised fatty acid moiety of muraymycin antibiotics; Med. Chem. Commun. 2015, 6, 879-886.
  14. B. Schmidtgall, C. Höbartner, C. Ducho; NAA-modified DNA oligonucleotides with zwitterionic backbones: stereoselective synthesis of A-T phosphoramidite building blocks; Beilstein J. Org. Chem. 2015, 11, 50-60.
  15. B. Schmidtgall, A. P. Spork, F. Wachowius, C. Höbartner, C. Ducho; Synthesis and properties of DNA oligonucleotides with a zwitterionic backbone structure; Chem. Commun. 2014, 50, 13742-13745.
  16. M. T. Rodolisa, A. Mihalyi, C. Ducho, K. Eitel, B. Gust, R. J. M. Goss, T. D. H. Bugg; Mechanism of action of the uridyl peptide antibiotics: an unexpected link to a protein-protein interaction site in translocase MraY; Chem. Commun. 2014, 50, 13023-13025.
  17. A. P. Spork, M. Büschleb, O. Ries, D. Wiegmann, S. Boettcher, A. Mihalyi, T. D. H. Bugg, C. Ducho; Lead Structures for New Antibacterials: Stereocontrolled Synthesis of a Bioactive Muraymycin Analogue; Chem. Eur. J. 2014, 20, 15292-15297.
  18. O. Ries, M. Büschleb, M. Granitzka, D. Stalke, C. Ducho; Amino acid motifs in natural products: synthesis of O-acylated derivatives of (2S,3S)-3-hydroxyleucine; Beilstein J. Org. Chem. 2014, 10, 1135-1142.
  19. M. Funabashi, S. Baba, T. Takatsu, M. Kizuka, Y. Ohata, M. Tanaka, K. Nonaka, A. P. Spork, C. Ducho, W.-C. L. Chen, S. G. Van Lanen; Structure-Based Gene Targeting Discovery of Sphaerimicin, a Bacterial Translocase I Inhibitor; Angew. Chem. 2013, 125, 11821-11825; Angew. Chem. Int. Ed. 2013, 52, 11607-11611.
  20. A. P. Spork, C. Ducho; Stereocontrolled Synthesis of 5'- and 6'-Epimeric Analogues of Muraymycin Nucleoside Antibiotics; Synlett 2013, 24, 343-346.
  21. W. Meiser, M. Buback, O. Ries, C. Ducho, A. Sidoruk; EPR-Study into cross-termination and fragmentation of the RAFT model system phenylethyl-phenylethyl dithiobenzoate; Macromol. Chem. Phys. 2013, 214, 924-933.
  22. O. Ries, M. Granitzka, D. Stalke, C. Ducho; Concise Synthesis and X-ray Crystal Structure of N-Benzyl-2-(pyrimidin-4'-ylamino)-thiazole-4-carboxamide ('Thiazovivin'), a Small-Molecule Tool for Stem Cell Research; Synth. Commun. 2013, 43, 2876-2882.
  23. R. B. Hamed, J. R. Gomez-Castellanos, L. Henry, C. Ducho, M. A. McDonough, C. J. Schofield; The enzymes of β-lactam biosynthesis; Nat. Prod. Rep. 2013, 30, 21-107. (Review, front cover)
  24. S. Barnard-Britson, X. Chi, K. Nonaka, A. P. Spork, N. Tibrewal, A. Goswami, P. Pahari, C. Ducho, J. Rohr, S. G. Van Lanen; Amalgamation of Nucleosides and Amino Acids in Antibiotic Biosynthesis: Discovery of an L-Threonine:Uridine-5′-Aldehyde Transaldolase; J. Am. Chem. Soc. 2012, 134, 18514-18517.
  25. M. Büschleb, M. Granitzka, D. Stalke, C. Ducho; A biomimetic domino reaction for the concise synthesis of capreomycidine and epicapreomycidine; Amino Acids 2012, 43, 2313-2328.
  26. R. B. Hamed, L. Henry, J. R. Gomez-Castellanos, J. Mecinović, C. Ducho, J. L. Sorensen, T. D. W. Claridge, C. J. Schofield; Crotonase Catalysis Enables Flexible Production of Functionalized Prolines and Carbapenams; J. Am. Chem. Soc. 2012, 134, 471-479.
  27. A. P. Spork, D. Wiegmann, M. Granitzka, D. Stalke, C. Ducho; Stereoselective Synthesis of Uridine-Derived Nucleosyl Amino Acids; J. Org. Chem. 2011, 76, 10083-10098.
  28. C. Ducho; Ein Kaleidoskop der zeitgenössischen Organischen Chemie: die 46ste Bürgenstock-Konferenz; Angew. Chem. 2011, 123, 6829-6832; A Kaleidoscope of Contemporary Organic Chemistry: the 46th Bürgenstock Conference; Angew. Chem. Int. Ed. 2011, 50, 6697-6700. (Meeting Review)
  29. O. Ries, A. Ochmann, C. Ducho; Synthesis of N-Alkyl-N-hydroxy-guanidines: A Comparative Study Using Different Protecting Group Strategies; Synthesis 2011, 2357-2368. (Feature Article)
  30. R. B. Hamed, J. R. Gomez-Castellanos, A. Thalhammer, D. Harding, C. Ducho, T. D. W. Claridge, C. J. Schofield; Stereoselective C-C bond formation catalysed by engineered carboxymethylproline synthases; Nat. Chem. 2011, 3, 365-371.
  31. C. Ducho; Konvergenz führt zum Erfolg: Totalsynthese des komplexen nicht-ribosomalen Peptids Polytheonamid B; Angew. Chem. 2010, 122, 5156-5158; Convergence Leads to Success: Total Synthesis of the Complex Nonribosomal Peptide Polytheonamide B; Angew. Chem. Int. Ed. 2010, 49, 5034-5036. (Highlight article)
  32. A. P. Spork, S. Koppermann, B. Dittrich, R. Herbst-Irmer, C. Ducho; Efficient synthesis of the core structure of muraymycin and caprazamycin nucleoside antibiotics based on a stereochemically revised sulfur ylide reaction; Tetrahedron: Asymmetry 2010, 21, 763-766.
  33. A. P. Spork, C. Ducho; Novel 5'-deoxy nucleosyl amino acid scaffolds for the synthesis of muraymycin analogues; Org. Biomol. Chem. 2010, 8, 2323-2326.
  34. R. B. Hamed, J. Mecinović, C. Ducho, T. D. W. Claridge, C. J. Schofield; Carboxymethylproline synthase catalysed syntheses of functionalised N-heterocycles; Chem. Commun. 2010, 46, 1413-1415.
  35. A. Lemke, M. Büschleb, C. Ducho; Concise synthesis of both diastereomers of 3-hydroxy-L-arginine; Tetrahedron 2010, 66, 208-214. (Front cover)
  36. A. P. Spork, S. Koppermann, C. Ducho; Improved Convergent Synthesis of 5'-epi-Analogues of Muraymycin Nucleoside Antibiotics; Synlett 2009, 2503-2507.
  37. C. Ducho, R. B. Hamed, E. T. Batchelar, J. L. Sorensen, B. Odell, C. J. Schofield; Synthesis of regio- and stereoselectively deuterium-labelled derivatives of L-glutamate semialdehyde for studies on carbapenem biosynthesis; Org. Biomol. Chem. 2009, 7, 2770-2779.
  38. C. Meier, N. Gisch, C. Ducho, J. Balzarini; CycloSaligenyl-di-d4TMP: Highly Loaded CycloSal-pronucleotides that Release Two Equivalents of Nucleotides and Leaving One Masking Unit; Antiviral Res. 2009, 82, A61.
  39. E. T. Batchelar, R. B. Hamed, C. Ducho, T. D. W. Claridge, M. J. Edelmann, B. Kessler, C. J. Schofield; Thioester Hydrolysis and C-C Bond Formation by Carboxymethylproline Synthase from the Crotonase Superfamily; Angew. Chem. 2008, 120, 9462-9465; Angew. Chem. Int. Ed. 2008, 47, 9322-9325.
  40. C. Ducho, U. Görbig, S. Jessel, N. Gisch, J. Balzarini, C. Meier; Bis-cycloSal-d4T-monophosphates: Drugs That Deliver Two Molecules of Bioactive Nucleotides; J. Med. Chem. 2007, 50, 1335-1346.
  41. C. Meier, C. Ducho, H. Jessen, D. Vukadinovic-Tenter, J. Balzarini; Second generation cycloSal-d4TMP pronucleotides bearing esterase-cleavable sites - the "trapping"-concept; Eur. J. Org. Chem. 2006, 197-206.
  42. C. Ducho, S. Jessel, N. Gisch, J. Balzarini, C. Meier; Novel cycloSal Nucleotides with Reduced Inhibitory Potency towards Human Butyrylcholinesterase; Nucleosides Nucleotides 2005, 24, 519-522.
  43. C. Meier, C. Ducho, H. Jessen, J. Balzarini; Esterase-cleavable cycloSal-pronucleotides - the trapping concept; Coll. Symp. Series 2005, 7, 105-113.
  44. C. Meier, C. Ducho, H. J. Jessen, J. Balzarini; Novel "lock-in" modified cycloSal nucleotides (II): Application of the AM- and the POM-group; Antiviral Res. 2005, 65, A27.
  45. C. Meier, C. Ducho, U. Görbig, R. Esnouf, J. Balzarini; Interaction of cycloSal-Pronucleotides with Cholinesterases from Different Origins. A Structure-Activity Relationship; J. Med. Chem. 2004, 47, 2839-2852.
  46. C. Meier, C. Ducho, J. Balzarini; Are cholinesterases inhibited by cycloSal nucleotides?; Antiviral Res. 2004, 62, A85.
  47. C. Ducho, S. Wendicke, U. Görbig, J. Balzarini, C. Meier; 3,5-Di-(tert-butyl)-6-fluoro-cycloSal-d4TMP - a pronucleotide with a considerably improved masking group; Eur. J. Org. Chem. 2003, 4786-4791.
  48. C. Ducho, J. Balzarini, C. Meier; Non-inhibition of Acetylcholinesterase by cycloSal Nucleotides; Nucleosides Nucleotides 2003, 22, 841-843.
  49. C. Ducho, J. Balzarini, C. Meier; Interaction of Cholinesterases with cycloSal Nucleotides; Antiviral Res. 2003, 57, A54.
  50. C. Meier, J. Renze, C. Ducho, J. Balzarini; cycloSal-d4TMP Pronucleotides - Structural Variations, Mechanistic Insights and Antiviral Activity; Curr. Top. Med. Chem. 2002, 2, 1111-1121. (Review)
  51. C. Ducho, J. Balzarini, L. Naesens, E. De Clercq, C. Meier; Aryl-substituted and Benzo-annulated cycloSal-derivatives of 2',3'-Dideoxy-2',3'-didehydrothymidine Monophosphate - Correlation of Structure, Hydrolysis Properties and Anti-HIV Activity; Antiviral Chem. Chemother. 2002, 13, 129-141.
  52. J. Renze, M. Plath, C. Ducho, J. Balzarini, E. De Clercq, C. Meier; Benzyl-functionalized cycloSal-d4T Monophosphates; Nucleosides Nucleotides 2001, 20, 931-934.
  53. J. Renze, M. Plath, C. Ducho, J. Balzarini, E. De Clercq, C. Meier; Hydrolysis Behaviour of Benzyl-functionalized cycloSal-d4TMPs; Antiviral Res. 2001, 50, A47.


  1. Isis Innovation, C. J. Schofield, R. B. Hamed, E. Batchelar, C. Ducho;   Methods for preparing substituted N-heterocyclic rings, especially trans-carboxymethyl-proline derivatives and analogs, via enzymatically carbon-carbon bond formation reaction in the presence of a crotonase superfamily protein or a homolog or variant for use in the synthesis of antibiotics; PCT Int. Appl. 2010, WO 2010046713.